Janis
latest
  • Welcome to Janis!
  • About
  • Pipeline concepts

Tutorials

  • Tutorial 0 - Introduction to Janis
  • Tutorial 1 - Building a Workflow
  • Tutorial 2 - Wrapping a new tool
  • Tutorial 3 - Naming and organising outputs
  • Adding a tool to a toolbox
  • Running your workflow
  • Containerising a tool

Shed / Toolbox

  • Pipelines
  • Tools
  • Data Types
    • BAI
    • BAM
    • bed
    • BedGz
    • BedTABIX
    • Boolean
    • CompressedIndexedVCF
    • CompressedTarFile
    • CompressedVCF
    • CRAI
    • CRAM
    • CramPair
    • csv
    • Directory
    • Double
    • Fasta
    • FastaBwa
    • FastaFai
    • FastaGz
    • FastaGzBwa
    • FastaGzFai
    • FastaGzWithIndexes
    • FastaWithIndexes
    • FastDict
    • FastGzDict
    • Fastq
    • FastqGz
    • File
    • Filename
    • Float
    • Gzip
    • HtmlFile
    • IndexedBam
    • IndexedVCF
    • Integer
    • jsonFile
    • KallistoIdx
    • SAM
    • Stdout
    • String
    • TarFile
    • TextFile
    • tsv
    • VCF
    • WhisperIdx
    • Zip
  • Templates
  • List of operators
  • Janis Shed and Toolboxes

API documentation

  • Framework Documentation
  • Workflow
  • Command Tool
  • Python Tool
  • Expressions
  • Scattering
  • Secondary / Accessory Files
  • Unit Test Framework

Guides

  • Configuring Janis Assistant
  • Configuring resources (CPU / Memory)
  • Call Caching
  • Common Workflow Language
  • Workflow Description Language
  • Engine support
  • Updating Janis
  • Frequently asked questions
  • Common errors

Development

  • Development
  • Contributing
  • Testing
  • Releasing Janis
Janis
  • Docs »
  • Data Types
  • Edit on GitHub

Data TypesΒΆ

Automatically generated index page for Data Types:

Contents:

  • BAI
  • BAM
  • bed
  • BedGz
  • BedTABIX
  • Boolean
  • CompressedIndexedVCF
  • CompressedTarFile
  • CompressedVCF
  • CRAI
  • CRAM
  • CramPair
  • csv
  • Directory
  • Double
  • Fasta
  • FastaBwa
  • FastaFai
  • FastaGz
  • FastaGzBwa
  • FastaGzFai
  • FastaGzWithIndexes
  • FastaWithIndexes
  • FastDict
  • FastGzDict
  • Fastq
  • FastqGz
  • File
  • Filename
  • Float
  • Gzip
  • HtmlFile
  • IndexedBam
  • IndexedVCF
  • Integer
  • jsonFile
  • KallistoIdx
  • SAM
  • Stdout
  • String
  • TarFile
  • TextFile
  • tsv
  • VCF
  • WhisperIdx
  • Zip

This page was auto-generated on 22/12/2020. Please do not directly alter the contents of this page.

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