Janis

latest

Welcome to Janis!
About
Pipeline concepts

Tutorials

Tutorial 0 - Introduction to Janis
Tutorial 1 - Building a Workflow
Tutorial 2 - Wrapping a new tool
Tutorial 3 - Naming and organising outputs
Adding a tool to a toolbox
Running your workflow
Containerising a tool

Shed / Toolbox

Pipelines
Tools
Data Types
Templates
List of operators
Janis Shed and Toolboxes

API documentation

Framework Documentation
Workflow
Command Tool
Python Tool
Janis Prepare
Expressions
Scattering
Secondary / Accessory Files
Unit Test Framework

Guides

Configuring Janis Assistant
Configuring resources (CPU / Memory)
Call Caching
Common Workflow Language
Workflow Description Language
Collecting tool outputs
Configuring Janis for HPCs
Engine support
Updating Janis
Frequently asked questions
Common errors
Parsing CWL

Development

Development
Contributing
Testing
Releasing Janis

Janis

Docs »
CellRanger
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CellRanger¶

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(1 versions) v3.0.2

Revision e1ae6b21.

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