Janis
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  • Welcome to Janis!
  • About
  • Quickstart Guide
  • Pipeline concepts

Tutorials: Translation

  • CWL to Nextflow
  • Galaxy to Nextflow

Tutorials: API

  • Introduction to Janis
  • Building a Workflow
  • Wrapping a new tool
  • Naming and organising outputs
  • Adding a tool to a toolbox
  • Running your workflow
  • Containerising a tool

Shed / Toolbox

  • Pipelines
  • Tools
  • Data Types
  • Templates
  • List of operators
  • Janis Shed and Toolboxes

API documentation

  • Framework Documentation
  • Workflow
  • Command Tool
  • Python Tool
  • Janis Prepare
  • Expressions
  • Scattering
  • Secondary / Accessory Files
  • Unit Test Framework

Guides

  • Configuring Janis Assistant
  • Configuring resources (CPU / Memory)
  • Call Caching
  • Common Workflow Language
  • Workflow Description Language
  • Engine support
  • Updating Janis
  • Frequently asked questions
  • Common errors
  • Parsing CWL

Development

  • Development
  • Contributing
  • Testing
  • Releasing Janis
Janis
  • Docs »
  • broad institute
  • Edit on GitHub

broad instituteΒΆ

Automatically generated index page for broad institute:

GATK3 DepthOfCoverage: Determine coverage at different levels of partitioning and aggregation. Gatk3DepthOfCoverage

(2 versions) v3.8-1

Revision bdefef3a.

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