Index

_

__init__() (janis.CommandToolBuilder method) (janis.InputDocumentation method) (janis.ScatterDescription method) (janis.ToolArgument method) (janis.ToolInput method) (janis.ToolOutput method), [1] (janis_assistant.management.configuration.JanisConfiguration method) (janis_assistant.management.configuration.JanisConfigurationCromwell method) (janis_assistant.management.configuration.JanisConfigurationEnvironment method) (janis_assistant.management.configuration.JanisConfigurationNotifications method) (janis_assistant.management.configuration.JanisConfigurationRecipes method) (janis_assistant.management.configuration.JanisConfigurationTemplate method) (janis_assistant.management.configuration.MySqlInstanceConfig method)

B

bind_metadata() (janis.Workflow method)

Boolean (class in janis)

C

code_block() (janis.PythonTool static method) CommandTool (class in janis) CommandToolBuilder (class in janis) config_dir (janis_assistant.management.envvariables.EnvVariables attribute)

config_path (janis_assistant.management.envvariables.EnvVariables attribute) constructor() (janis.DynamicWorkflow method) (janis.Workflow method) cromwelljar (janis_assistant.management.envvariables.EnvVariables attribute)

D

default_template (janis_assistant.management.envvariables.EnvVariables attribute)

DynamicWorkflow (class in janis)

E

EnvVariables (class in janis_assistant.management.envvariables)

exec_dir (janis_assistant.management.envvariables.EnvVariables attribute)

F

File (class in janis) Filename (class in janis)

Float (class in janis) friendly_name() (janis.Workflow method)

I

id() (janis.Workflow method) input() (janis.Workflow method)

InputDocumentation (class in janis) InputSelector (class in janis) Int (class in janis)

J

JanisConfiguration (class in janis_assistant.management.configuration) JanisConfigurationCromwell (class in janis_assistant.management.configuration) JanisConfigurationEnvironment (class in janis_assistant.management.configuration)

JanisConfigurationNotifications (class in janis_assistant.management.configuration) JanisConfigurationRecipes (class in janis_assistant.management.configuration) JanisConfigurationTemplate (class in janis_assistant.management.configuration)

M

modify_inputs() (janis.DynamicWorkflow method)

MySqlInstanceConfig (class in janis_assistant.management.configuration)

O

output() (janis.Workflow method)

output_dir (janis_assistant.management.envvariables.EnvVariables attribute)

P

PythonTool (class in janis)

R

recipe_directory (janis_assistant.management.envvariables.EnvVariables attribute)

recipe_paths (janis_assistant.management.envvariables.EnvVariables attribute)

S

ScatterDescription (class in janis) ScatterMethods (in module janis) search_path (janis_assistant.management.envvariables.EnvVariables attribute)

step() (janis.Workflow method) String (class in janis) StringFormatter (class in janis)

T

ToolArgument (class in janis) ToolInput (class in janis) ToolOutput (class in janis), [1]

translate() (janis.Workflow method) TTestCase (class in janis_core.tool.test_classes) TTestExpectedOutput (class in janis_core.tool.test_classes) TTestPreprocessor (class in janis_core.tool.test_classes)

W

WildcardSelector (class in janis)

Workflow (class in janis) WorkflowBuilder (class in janis)