Janis
latest
  • Welcome to Janis!
  • About
  • Pipeline concepts

Tutorials

  • Tutorial 0 - Introduction to Janis
  • Tutorial 1 - Building a Workflow
  • Tutorial 2 - Wrapping a new tool
  • Tutorial 3 - Naming and organising outputs
  • Adding a tool to a toolbox
  • Running your workflow
  • Containerising a tool

Shed / Toolbox

  • Pipelines
  • Tools
  • Data Types
  • Templates
  • List of operators
  • Janis Shed and Toolboxes

API documentation

  • Framework Documentation
  • Workflow
  • Command Tool
  • Python Tool
  • Expressions
  • Scattering
  • Secondary / Accessory Files
  • Unit Test Framework

Guides

  • Configuring Janis Assistant
  • Configuring resources (CPU / Memory)
  • Call Caching
  • Common Workflow Language
  • Workflow Description Language
  • Engine support
  • Updating Janis
  • Frequently asked questions
  • Common errors

Development

  • Development
  • Contributing
  • Testing
  • Releasing Janis
Janis
  • Docs »
  • bioinformatics
  • Edit on GitHub

bioinformaticsΒΆ

Automatically generated index page for bioinformatics:

  • arriba
  • bcftools
  • bedtools
  • biobambam
  • broad institute
  • bwa
  • cellranger
  • cold spring harbor laboratory
  • common
  • cutadapt
  • dawson labs
  • ekg
  • ensembl
  • ensembl
  • erik garrison
  • facets
  • fastqc
  • gatk4
  • htslib
  • igvtools
  • illumina
  • io_lib
  • kallisto
  • multiqc
  • oncopipe
  • oshlack
  • papenfuss labs
  • peter maccallum cancer centre
  • samtools
  • sequenza
  • subread
  • ucsf
  • usadel lab
  • vardict
  • variant callers
  • vcftools
  • whisper

None join_indexed_fastas

(1 versions) v0.1.0



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