PipelinesΒΆ
WGS Germline (Multi callers)
wgscancergermlinevariantsgatkvardictstrelka
A variant-calling WGS pipeline using GATK, VarDict and Strelka2.
Contributors: Michael Franklin, Richard Lupat, Jiaan Yu
v1.4.0WGS Germline (Multi callers) [VARIANTS only]
wgscancergermlinevariantsgatkvardictstrelka
A variant-calling WGS pipeline using GATK, VarDict and Strelka2.
Contributors: Michael Franklin, Richard Lupat, Jiaan Yu
v1.4.0WGS Germline (GATK)
wgscancergermlinevariantsgatk
A variant-calling WGS pipeline using only the GATK Haplotype variant caller.
Contributors: Michael Franklin, Richard Lupat, Jiaan Yu
v1.4.0WGS Germline (GATK) [VARIANTS only]
wgscancergermlinevariantsgatk
A variant-calling WGS pipeline using only the GATK Haplotype variant caller.
Contributors: Michael Franklin, Richard Lupat, Jiaan Yu
v1.4.0WGS Somatic (Multi callers)
wgscancersomaticvariantsgatkvardictstrelkagridss
A somatic tumor-normal variant-calling WGS pipeline using GATK, VarDict and Strelka2.
Contributors: Michael Franklin, Richard Lupat, Jiaan Yu
v1.4.0WGS Somatic (Multi callers) [VARIANTS only]
wgscancersomaticvariantsgatkvardictstrelkagridss
A somatic tumor-normal variant-calling WGS pipeline using GATK, VarDict and Strelka2.
Contributors: Michael Franklin, Richard Lupat, Jiaan Yu
v1.4.0WGS Somatic (GATK only)
wgscancersomaticvariantsgatk
A somatic tumor-normal variant-calling WGS pipeline using only GATK Mutect2
Contributors: Michael Franklin, Richard Lupat, Jiaan Yu
v1.4.0WGS Somatic (GATK only) [VARIANTS only]
wgscancersomaticvariantsgatk
A somatic tumor-normal variant-calling WGS pipeline using only GATK Mutect2
Contributors: Michael Franklin, Richard Lupat, Jiaan Yu
v1.4.0