Janis
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Welcome to Janis!
About
Quickstart Guide
Pipeline concepts
Tutorials: Translation
CWL to Nextflow
Galaxy to Nextflow
Tutorials: API
Introduction to Janis
Building a Workflow
Wrapping a new tool
Naming and organising outputs
Adding a tool to a toolbox
Running your workflow
Containerising a tool
Shed / Toolbox
Pipelines
Tools
Data Types
Templates
List of operators
Janis Shed and Toolboxes
API documentation
Framework Documentation
Workflow
Command Tool
Python Tool
Janis Prepare
Expressions
Scattering
Secondary / Accessory Files
Unit Test Framework
Guides
Configuring Janis Assistant
Configuring resources (CPU / Memory)
Call Caching
Common Workflow Language
Workflow Description Language
Engine support
Updating Janis
Frequently asked questions
Common errors
Parsing CWL
Development
Development
Contributing
Testing
Releasing Janis
Janis
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