Janis
latest
  • Welcome to Janis!
  • About
  • Pipeline concepts

Tutorials

  • Tutorial 0 - Introduction to Janis
  • Tutorial 1 - Building a Workflow
  • Tutorial 2 - Wrapping a new tool
  • Tutorial 3 - Naming and organising outputs
  • Adding a tool to a toolbox
  • Running your workflow
  • Containerising a tool

Shed / Toolbox

  • Pipelines
  • Tools
  • Data Types
  • Templates
  • List of operators
  • Janis Shed and Toolboxes

API documentation

  • Framework Documentation
  • Workflow
  • Command Tool
  • Python Tool
  • Janis Prepare
  • Expressions
  • Scattering
  • Secondary / Accessory Files
  • Unit Test Framework

Guides

  • Configuring Janis Assistant
  • Configuring resources (CPU / Memory)
  • Call Caching
  • Common Workflow Language
  • Workflow Description Language
  • Collecting tool outputs
  • Configuring Janis for HPCs
  • Engine support
  • Updating Janis
  • Frequently asked questions
  • Common errors
  • Parsing CWL

Development

  • Development
  • Contributing
  • Testing
  • Releasing Janis
Janis
  • Docs »
  • Overview: module code

All modules for which code is available

  • janis_assistant.management.configuration
  • janis_assistant.management.envvariables
  • janis_core.code.pythontool
  • janis_core.operators.selectors
  • janis_core.operators.stringformatter
  • janis_core.tool.commandtool
  • janis_core.tool.documentation
  • janis_core.tool.test_classes
  • janis_core.tool.tool
  • janis_core.types.common_data_types
  • janis_core.utils.scatter
  • janis_core.workflow.workflow

Revision e1ae6b21.

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