Wehi

Template ID: wehi

Quickstart

Take note below how to configure the template. This quickstart only includes the fields you absolutely require. This will write a new configuration to ~/.janis.conf. See configuring janis for more information.

janis init wehi \
    --container_dir <value>

# or to find out more information
janis init wehi --help

OR you can insert the following lines into your template:

template:
  id: wehi
  container_dir: <value>

Fields

Required

ID	Type	Documentation
container_dir	<class ‘str’>

Optional

ID	Type	Default	Documentation
intermediate_execution_dir	<class ‘str’>		A location where the execution should take place
queues	typing.Union[typing.List[str], str]		A single or list of queues that woork should be submitted to
singularity_version	<class ‘str’>	3.4.1	Version of singularity to load
catch_pbs_errors	<class ‘bool’>	True	Catch PBS errors (like OOM or walltime)
send_job_emails	<class ‘bool’>	True	(requires JanisConfiguration.notifications.email to be set) Send emails for mail types END
build_instructions			Instructions for building singularity, it’s recommended to not touch this setting.
max_cores	<class ‘int’>	40	Maximum number of cores a task can request
max_ram	<class ‘int’>	256	Maximum amount of ram (GB) that a task can request